MolNFT v1 · #126550 · DNA
At-rich DNA dodecamer with extra helical guanine-nickel coordination
5M68: “At-rich DNA dodecamer with extra helical guanine-nickel coordination”. X-ray diffraction, 1 ligand (NI). MolNFT v1 #126550 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M68
- Type
- DNA
- Length
- 66 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NI
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | dna | 11 | — | — |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 11 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M68 · AT-rich DNA dodecamer with extra helical guanine-nickel coordination · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5M68 · PDBe 5M68
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