MolNFT v1 · #126544 · protein
Structure of the mus musclus langerin carbohydrate recognition domain in complex with glucose
5M62: “Structure of the mus musclus langerin carbohydrate recognition domain in complex with glucose”. X-ray diffraction, 3 ligands (BGC, GLC, CA). MolNFT v1 #126544 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M62
- Type
- protein
- Length
- 272 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8VBX4
- Ligands
- BGC, GLC, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 136 | — | Q8VBX4 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A, B
- GLC · alpha-D-glucopyranose · sugar · chains B
- CA · Calcium ion · metal · 2 copies · chains A, B
- GOL · Glycerol · additive · 8 copies · chains A, B
- P6G · Hexaethylene glycol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M62 · Structure of the Mus musclus Langerin carbohydrate recognition domain in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8VBX4 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 4 member K (Q8VBX4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VBX4
- Elsewhere: RCSB PDB 5M62 · PDBe 5M62 · UniProt Q8VBX4
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