MolNFT v1 · #126534 · protein
Clathrin heavy chain N-terminal domain bound to amphiphysin clathrin- box motif
5M5S: “Clathrin heavy chain N-terminal domain bound to amphiphysin clathrin- box motif”. X-ray diffraction. MolNFT v1 #126534 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M5S
- Type
- protein
- Length
- 754 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P49951, P49418
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 360 | — | P49951 |
| E, F | — | protein | 7 | — | P49418 |
| G, H | — | protein | 10 | — | P49418 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M5S · Clathrin heavy chain N-terminal domain bound to amphiphysin clathrin-box motif · the same entry in another collection · chain H against H, TM-score 1.00
- P49951 · AlphaFold monomer V2.0 prediction for clathrin heavy chain 1 (P49951) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P49418 · AlphaFold monomer V2.0 prediction for amphiphysin (P49418) · a predicted model of the same protein · chain E against A, TM-score 0.53
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49951
- Every structure of UniProt P49418
- Elsewhere: RCSB PDB 5M5S · PDBe 5M5S · UniProt P49951 · UniProt P49418
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