MolNFT v1 · #126505 · protein
Crystal structure of the complex of T.SPIRALIS thymidylate synthase with N(4)-hydroxy-2'-deoxycytidine-5'-monophosphate, crystallized in the presence of N(5,10)-methylenetetrahydrofolate
5M4Z: “Crystal structure of the complex of T.SPIRALIS thymidylate synthase with…”. X-ray diffraction, 1 ligand (7K8). MolNFT v1 #126505 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M4Z
- Type
- protein
- Length
- 573 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NDD3
- Ligands
- 7K8
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 287 | — | Q9NDD3 |
| B | — | protein | 286 | — | Q9NDD3 |
Ligands and binding sites
- 7K8 · [(2~{R},3~{S},5~{R})-5-[(4~{E})-4-hydroxyimino-2-oxidanylidene-1,3-diazinan-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M4Z · Crystal structure of the complex of T.spiralis thymidylate synthase with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NDD3
- Elsewhere: RCSB PDB 5M4Z · PDBe 5M4Z · UniProt Q9NDD3
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