MolNFT v1 · #126451 · protein

Structural tuning of CD81LEL (space group P31)

5M3D: “Structural tuning of CD81LEL (space group P31)”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #126451 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5M3D
Type: protein
Length: 359 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P60033
Ligands: PO4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	90	—	P60033
B	—	protein	91	—	P60033
C, D	—	protein	89	—	P60033

Ligands and binding sites

PO4 · Phosphate ion · ion · 6 copies · chains B, A, C, D
EDO · 1,2-ethanediol · additive · 6 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5M3D · Structural tuning of CD81LEL (space group P31) · the same entry in another collection · chain C against C, TM-score 1.00
P60033 · AlphaFold monomer V2.0 prediction for CD81 antigen (P60033) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P60033
Elsewhere: RCSB PDB 5M3D · PDBe 5M3D · UniProt P60033

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