MolNFT v1 · #126441 · protein

Structural tuning of CD81LEL (space group P21)

5M33 · CD81 antigen: “Structural tuning of CD81LEL (space group P21)”. X-ray diffraction. MolNFT v1 #126441 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5M33
Type: protein
Length: 178 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CD81 antigen
UniProt: P60033

Structure

x-ray diffraction · 2 distinct chains · 65% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CD81 antigen	protein	92	64% helix, 0% strand	P60033
B	CD81 antigen	protein	86	65% helix, 0% strand	P60033

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 7 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1004 Å² buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5M33 · Structural tuning of CD81LEL (space group P21) · the same entry in another collection · chain A against A, TM-score 1.00
P60033 · AlphaFold monomer V2.0 prediction for CD81 antigen (P60033) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P60033
Elsewhere: RCSB PDB 5M33 · PDBe 5M33 · UniProt P60033

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.