MolNFT v1 · #126370 · protein
Structural and functional probing of porz, an essential bacterial surface component of the type-IX secretion system of human oral- microbiomic porphyromonas gingivalis.
5M11: “Structural and functional probing of porz, an essential bacterial surface component of the type-IX secretion…”. X-ray diffraction, 3 ligands (ZN, CA, CL). MolNFT v1 #126370 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5M11
- Type
- protein
- Length
- 748 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9S3Q8
- Ligands
- ZN, CA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 748 | — | Q9S3Q8 |
Ligands and binding sites
- ZN · Zinc ion · metal · 8 copies · chains A
- CA · Calcium ion · metal · 4 copies · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- CAC · Cacodylate ion · additive · chains A
- PG4 · Tetraethylene glycol · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M11 · Structural and functional probing of PorZ, an essential bacterial surface component of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9S3Q8
- Elsewhere: RCSB PDB 5M11 · PDBe 5M11 · UniProt Q9S3Q8
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