MolNFT v1 · #126311 · protein
Crystal structure of human methionine aminopeptidase-2 in complex; with an inhibitor 6-((R)-2-O-tolyloxymethyl-pyrrolidin-1-yl)-9H- purine
5LYW: “Crystal structure of human methionine aminopeptidase-2 in complex; with an inhibitor…”. X-ray diffraction, 2 ligands (7BH, MN). MolNFT v1 #126311 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LYW
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P50579
- Ligands
- 7BH, MN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 359 | — | P50579 |
Ligands and binding sites
- 7BH · 6-[(2~{R})-2-[(2-methylphenoxy)methyl]pyrrolidin-1-yl]-7~{H}-purine · ligand · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LYW · CRYSTAL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 IN COMPLEX; WITH AN INHIBITOR… · the same entry in another collection · chain A against A, TM-score 1.00
- P50579 · AlphaFold monomer V2.0 prediction for methionine aminopeptidase 2 (P50579) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50579
- Elsewhere: RCSB PDB 5LYW · PDBe 5LYW · UniProt P50579
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