MolNFT v1 · #126264 · protein

Gabarap-L1 ATG4B lir complex

5LXI: “Gabarap-L1 ATG4B lir complex”. X-ray diffraction, 2 ligands (MG, PER). MolNFT v1 #126264 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LXI
Type: protein
Length: 251 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9H0R8, Q9Y4P1
Ligands: MG, PER

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D	—	protein	117	—	Q9H0R8
B	—	protein	116	—	Q9H0R8
C	—	protein	10	—	Q9Y4P1
E	—	protein	8	—	Q9Y4P1

Ligands and binding sites

MG · Magnesium ion · metal · 3 copies · chains D, B
PER · Peroxide ion · ion · 2 copies · chains D, C
PGE · Triethylene glycol · additive · 2 copies · chains D
EDO · 1,2-ethanediol · additive · chains D
PEG · Di(hydroxyethyl)ether · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5LXI · GABARAP-L1 ATG4B LIR Complex · the same entry in another collection · chain E against E, TM-score 1.00
Q9H0R8 · AlphaFold monomer V2.0 prediction for gamma-aminobutyric acid receptor-associated… · a predicted model of the same protein · chain B against A, TM-score 0.98
Q9Y4P1 · AlphaFold monomer V2.0 prediction for cysteine protease ATG4B (Q9Y4P1) · a predicted model of the same protein · chain E against A, TM-score 0.46

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9H0R8
Every structure of UniProt Q9Y4P1
Elsewhere: RCSB PDB 5LXI · PDBe 5LXI · UniProt Q9H0R8 · UniProt Q9Y4P1

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