MolNFT v1 · #126263 · protein
Gabarap-L1 ATG4B lir complex
5LXH: “Gabarap-L1 ATG4B lir complex”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #126263 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LXH
- Type
- protein
- Length
- 374 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9H0R8, Q9Y4P1
- Ligands
- SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 115 | — | Q9H0R8 |
| B | — | protein | 115 | — | Q9H0R8 |
| C | — | protein | 114 | — | Q9H0R8 |
| E, F, G | — | protein | 10 | — | Q9Y4P1 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 7 copies · chains A, B, E, F, C, G
- GOL · Glycerol · additive · 3 copies · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LXH · GABARAP-L1 ATG4B LIR Complex · the same entry in another collection · chain G against G, TM-score 1.00
- Q9H0R8 · AlphaFold monomer V2.0 prediction for gamma-aminobutyric acid receptor-associated… · a predicted model of the same protein · chain A against A, TM-score 0.96
- Q9Y4P1 · AlphaFold monomer V2.0 prediction for cysteine protease ATG4B (Q9Y4P1) · a predicted model of the same protein · chain E against A, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H0R8
- Every structure of UniProt Q9Y4P1
- Elsewhere: RCSB PDB 5LXH · PDBe 5LXH · UniProt Q9H0R8 · UniProt Q9Y4P1
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