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MolNFT v1 · #126213 · protein

Azotobacter vinelandii mannuronan C-5 epimerase ALGE6 a-module

5LW3 · POLY(BETA-D-mannuronate) C5 epimerase 6: “Azotobacter vinelandii mannuronan C-5 epimerase ALGE6 a-module”. X-ray diffraction, 2 ligands (CA, CL), 1 pocket (best druggability 0.32). MolNFT v1 #126213 on GenesisL1: 3D structure…

PDB
5LW3
Type
protein
Length
381 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
POLY(BETA-D-mannuronate) C5 epimerase 6
EC
5.1.3.-
UniProt
Q9ZFH0
Ligands
CA, CL
Pockets
1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 46% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
APOLY(BETA-D-mannuronate) C5 epimerase 6 (EC 5.1.3.-)protein3816% helix, 46% strandQ9ZFH0

Ligands and binding sites

  • CA · Calcium ion · metal · chains A
  • CL · Chloride ion · ion · chains A
  • B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1840.320.7423empty

Compared structures

  • 5LW3 · Azotobacter vinelandii Mannuronan C-5 epimerase AlgE6 A-module · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9ZFH0 · AlphaFold monomer V2.0 prediction for mannuronan C5-epimerase ALGE6 (Q9ZFH0) · a predicted model of the same protein · chain A against A, TM-score 0.99

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