MolNFT v1 · #126206 · protein
Xiaf (FADH2) from streptomyces sp.
5LVW · Xiaf protein: “Xiaf (FADH2) from streptomyces sp.”. X-ray diffraction, 3 ligands (FAD, IND, SO4), 3 pockets (best druggability 0.66). MolNFT v1 #126206 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LVW
- Type
- protein
- Length
- 393 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xiaf protein
- UniProt
- I7IIA9
- Ligands
- FAD, IND, SO4
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 60% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xiaf protein | protein | 393 | 60% helix, 16% strand | I7IIA9 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- IND · Indole · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 321 | 0.66 | 0.81 | 39 | FAD, IND |
| 2 | 132 | 0.41 | 0.75 | 23 | empty |
| 3 | 87 | 0.41 | 0.78 | 25 | empty |
Compared structures
- 5LVW · XiaF (FADH2) from Streptomyces sp. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I7IIA9
- Elsewhere: RCSB PDB 5LVW · PDBe 5LVW · UniProt I7IIA9
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