MolNFT v1 · #126135 · protein
Structure of the yellow-green fluorescent protein mneongreen from branchiostoma lanceolatum at the near physiological pH 8.0
5LTR: “Structure of the yellow-green fluorescent protein mneongreen from branchiostoma lanceolatum at the near…”. X-ray diffraction, 2 ligands (CR2, CL), 1 pocket (best druggability 0.75). MolNFT v1 #126135 on GenesisL1: 3D structure…
- PDB
- 5LTR
- Type
- protein
- Length
- 216 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mneongreen
- Ligands
- CR2, CL
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mneongreen | protein | 216 | 9% helix, 57% strand | — |
Ligands and binding sites
- CR2 · {(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.75 | 0.99 | 23 | CR2, CL |
Modifications
Observed in the structure: 2 cofactor, 1 modified (chromophore, carboxylation).
Compared structures
- 5LTR · Structure of the Yellow-Green Fluorescent Protein mNeonGreen from Branchiostoma… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5LTR · PDBe 5LTR
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