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Structure of the yellow-green fluorescent protein mneongreen from branchiostoma lanceolatum at the near physiological pH 8.0

Analyse Structure of the yellow-green fluorescent protein mneongreen from branchiostoma… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5LTR
Type: protein
Length: 216 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mneongreen
Ligands: CR2, CL
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mneongreen	protein	216	9% helix, 57% strand	—

Ligands and binding sites

CR2 · {(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.75	0.99	23	CR2, CL

Modifications

Observed in the structure: 2 cofactor, 1 modified (chromophore, carboxylation).

Compared structures

5LTR · Structure of the Yellow-Green Fluorescent Protein mNeonGreen from Branchiostoma… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5LTR · PDBe 5LTR

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