MolNFT v1 · #126080 · protein
Complex of wild type E. COLI alpha aspartate decarboxylase with its processing factor panz
5LS7: “Complex of wild type E. COLI alpha aspartate decarboxylase with its processing factor panz”. X-ray diffraction, 6 ligands (PVO, ACO, MG). MolNFT v1 #126080 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LS7
- Type
- protein
- Length
- 253 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A790, P37613
- Ligands
- PVO, ACO, MG, CO2, SCN, 74C
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 24 | — | P0A790 |
| B | — | protein | 128 | — | P37613 |
| D | — | protein | 101 | — | P0A790 |
Ligands and binding sites
- PVO · 2,2-bis(oxidanyl)propanoic acid · ligand · chains A, D
- ACO · Acetyl coenzyme *A · ligand · chains B, D
- MG · Magnesium ion · metal · chains B
- CO2 · Carbon dioxide · ion · 3 copies · chains B, D
- SCN · Thiocyanate ion · ion · 2 copies · chains A, D, B
- 74C · methyl radical · ion · chains D
- GOL · Glycerol · additive · 2 copies · chains B, D
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains B, A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LS7 · Complex of wild type E. coli alpha aspartate decarboxylase with its processing factor PanZ · the same entry in another collection · chain A against A, TM-score 1.00
- P0A790 · AlphaFold monomer V2.0 prediction for aspartate 1-decarboxylase (P0A790) · a predicted model of the same protein · chain D against A, TM-score 1.00
- P37613 · AlphaFold monomer V2.0 prediction for pand regulatory factor (P37613) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A790
- Every structure of UniProt P37613
- Elsewhere: RCSB PDB 5LS7 · PDBe 5LS7 · UniProt P0A790 · UniProt P37613
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.