MolNFT v1 · #126078 · protein
Mopeia virus exonuclease domain complexed with calcium
5LS4 · Nucleoprotein: “Mopeia virus exonuclease domain complexed with calcium”. X-ray diffraction, 2 ligands (CA, ZN), 2 pockets (best druggability 0.46). MolNFT v1 #126078 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LS4
- Type
- protein
- Length
- 206 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein
- UniProt
- Q5S581
- Ligands
- CA, ZN
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 206 | 37% helix, 18% strand | Q5S581 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- ZN · Zinc ion · metal · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 188 | 0.46 | 0.75 | 23 | CA |
| 2 | 91 | 0.40 | 0.77 | 17 | empty |
Compared structures
- 5LS4 · Mopeia virus exonuclease domain complexed with Calcium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5S581
- Elsewhere: RCSB PDB 5LS4 · PDBe 5LS4 · UniProt Q5S581
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