MolNFT v1 · #126037 · protein
Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid lppg
5LQV · Non-specific lipid-transfer protein 2: “Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid lppg”. Solution nmr, 1 ligand (PGM), 1 pocket (best druggability 0.78). MolNFT v1 #126037 on GenesisL1…
- PDB
- 5LQV
- Type
- protein
- Length
- 93 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-specific lipid-transfer protein 2
- UniProt
- A0AT29
- Ligands
- PGM
- Pockets
- 1 · best druggability 0.78
Structure
solution nmr · 1 distinct chain · 57% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-specific lipid-transfer protein 2 | protein | 93 | 57% helix, 0% strand | A0AT29 |
Ligands and binding sites
- PGM · 1-myristoyl-2-hydroxy-sn-glycero-3-[phospho-rac-(1-glycerol)] · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 456 | 0.78 | 0.86 | 40 | PGM |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5LQV · Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid… · the same entry in another collection · chain A against A, TM-score 1.00
- A0AT29 · AlphaFold monomer V2.0 prediction for non-specific lipid-transfer protein 2 (A0AT29) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0AT29
- Elsewhere: RCSB PDB 5LQV · PDBe 5LQV · UniProt A0AT29
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.