Research workbench
Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid lppg
Analyse Spatial structure of the lentil lipid transfer protein in complex with anionic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LQV
- Type
- protein
- Length
- 93 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-specific lipid-transfer protein 2
- UniProt
- A0AT29
- Ligands
- PGM
- Pockets
- 1 · best druggability 0.78
Structure
solution nmr · 1 distinct chain · 57% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-specific lipid-transfer protein 2 | protein | 93 | 57% helix, 0% strand | A0AT29 |
Ligands and binding sites
- PGM · 1-myristoyl-2-hydroxy-sn-glycero-3-[phospho-rac-(1-glycerol)] · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 456 | 0.78 | 0.86 | 40 | PGM |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5LQV · Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid… · the same entry in another collection · chain A against A, TM-score 1.00
- A0AT29 · AlphaFold monomer V2.0 prediction for non-specific lipid-transfer protein 2 (A0AT29) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0AT29
- Elsewhere: RCSB PDB 5LQV · PDBe 5LQV · UniProt A0AT29
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