Thrombin in complex with (S)-1-((R)-2-amino-3-cyclohexylpropanoyl)-N- (2-(aminomethyl)-5-chlorobenzyl) pyrrolidine-2-carboxamide

Structure

x-ray diffraction · 3 distinct chains.

Ligands and binding sites

• 71U · (2~{S})-~{N}-[[2-(aminomethyl)-5-chloranyl-phenyl]methyl]-1-[(2~{R})-2-azanyl-3-cyclohexyl-propanoyl]pyrrolidine-2-carboxamide · ligand · chains H
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains H
• NA · Sodium ion · metal · 2 copies · chains H
• PO4 · Phosphate ion · ion · chains H
• GOL · Glycerol · additive · chains H
• DMS · Dimethyl sulfoxide · additive · chains H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 5LPD · Thrombin in complex with (S)-1-((R)-2-amino-3-cyclohexylpropanoyl)-N-(2-(aminomethyl)-5-ch… · the same entry in another collection · chain L against L, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P00734
• Every structure of UniProt P09945
• Elsewhere: RCSB PDB 5LPD · PDBe 5LPD · UniProt P00734 · UniProt P09945