MolNFT v1 · #125950 · protein

Crystal structure of hhai DNA methyltransferase in apo form

5LOD: “Crystal structure of hhai DNA methyltransferase in apo form”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #125950 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LOD
Type: protein
Length: 642 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P05102
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	—	protein	321	—	P05102

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5LOD · Crystal structure of HhaI DNA methyltransferase in APO form · the same entry in another collection · chain B against B, TM-score 1.00
P05102 · AlphaFold monomer V2.0 prediction for modification methylase hhai (P05102) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05102
Elsewhere: RCSB PDB 5LOD · PDBe 5LOD · UniProt P05102

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