MolNFT v1 · #125776 · DNA
Crystal structure of DNA duplex containing zp base pair
5LJ4 · ODN2: “Crystal structure of DNA duplex containing zp base pair”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #125776 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LJ4
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ODN2
- Ligands
- CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | ODN2 | dna | 11 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 457 Ų buried · 38 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 4 modified (nucleotide modification).
Compared structures
- 5LJ4 · Crystal structure of DNA duplex containing ZP base pair · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5LJ4 · PDBe 5LJ4
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