MolNFT v1 · #125705 · protein
Structure of photoreduced pentaerythritol tetranitrate reductase
5LGZ: “Structure of photoreduced pentaerythritol tetranitrate reductase”. X-ray diffraction, 1 ligand (FNR), 1 pocket (best druggability 0.78). MolNFT v1 #125705 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LGZ
- Type
- protein
- Length
- 363 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pentaerythritol tetranitrate reductase
- UniProt
- P71278
- Ligands
- FNR
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentaerythritol tetranitrate reductase | protein | 363 | 34% helix, 18% strand | P71278 |
Ligands and binding sites
- FNR · 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydro-2H-benzo[g]pteridin-1-id-10(5H)-yl)-5-O-phosphonato-D-ribitol · ligand · chains A
- IPA · Isopropyl alcohol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 398 | 0.78 | 0.87 | 40 | IPA, FNR |
Compared structures
- 5LGZ · Structure of Photoreduced Pentaerythritol Tetranitrate Reductase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71278
- Elsewhere: RCSB PDB 5LGZ · PDBe 5LGZ · UniProt P71278
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