MolNFT v1 · #125701 · protein
Glge isoform 1 from streptomyces coelicolor E423A mutant soaked in maltooctaose
5LGV · Alpha-1,4-GLUCAN:MALTOSE-1-phosphate maltosyltransferase 1: “Glge isoform 1 from streptomyces coelicolor E423A mutant soaked in maltooctaose”. X-ray diffraction, 1 ligand (GLC), 12 pockets (best druggability 0.77). MolNFT v1 #125701…
- PDB
- 5LGV
- Type
- protein
- Length
- 1,298 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-1,4-GLUCAN:MALTOSE-1-phosphate maltosyltransferase 1
- EC
- 2.4.99.16
- UniProt
- Q9L1K2
- Ligands
- GLC
- Pockets
- 12 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alpha-1,4-GLUCAN:MALTOSE-1-phosphate maltosyltransferase 1 (EC 2.4.99.16) | protein | 649 | 35% helix, 25% strand | Q9L1K2 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 26 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 955 | 0.77 | 0.79 | 72 | empty |
| 2 | 960 | 0.77 | 0.79 | 76 | empty |
| 3 | 347 | 0.72 | 0.84 | 34 | GLC |
| 4 | 339 | 0.71 | 0.83 | 33 | GLC |
| 5 | 831 | 0.70 | 0.76 | 88 | empty |
Interfaces
1 interface between chains.
- A–B · 2269 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 5LGV · GlgE isoform 1 from Streptomyces coelicolor E423A mutant soaked in maltooctaose · the same entry in another collection · chain A against A, TM-score 1.00
- Q9L1K2 · AlphaFold monomer V2.0 prediction for alpha-1,4-GLUCAN:MALTOSE-1-phosphate… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9L1K2
- Elsewhere: RCSB PDB 5LGV · PDBe 5LGV · UniProt Q9L1K2
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