MolNFT v1 · #125682 · protein
Structural analysis and biological activities of BXL0124, a gemini analog of vitamin D
5LGA: “Structural analysis and biological activities of BXL0124, a gemini analog of vitamin D”. X-ray diffraction, 1 ligand (6VH). MolNFT v1 #125682 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LGA
- Type
- protein
- Length
- 248 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9PTN2
- Ligands
- 6VH
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 238 | — | Q9PTN2 |
| B | — | protein | 10 | — | — |
Ligands and binding sites
- 6VH · (1~{R},3~{S},5~{Z})-5-[2-[(1~{R},3~{A}~{S},7~{A}~{R})-7~{A}-methyl-1-[(6~{R})-1,1,1-tris(fluoranyl)-10-methyl-2,10-bis(oxidanyl)-2-(trifluoromethyl)undeca-3, 8-diyn-6-yl]-2,3,3~{A},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LGA · Structural analysis and biological activities of BXL0124, a Gemini analog of Vitamin D · the same entry in another collection · chain A against A, TM-score 1.00
- Q9PTN2 · AlphaFold monomer V2.0 prediction for vitamin D3 receptor a (Q9PTN2) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PTN2
- Elsewhere: RCSB PDB 5LGA · PDBe 5LGA · UniProt Q9PTN2
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