MolNFT v1 · #125669 · DNA
Lambda-[RU(PHEN)2(DPPZ-11,12-ME)]2+ bound to a short substituted DNA sequence
5LFX · DNA (5'-D(*GP*CP*CP*G)-3'): “Lambda-[RU(PHEN)2(DPPZ-11,12-ME)]2+ bound to a short substituted DNA sequence”. X-ray diffraction, 2 ligands (9ZQ, BA). MolNFT v1 #125669 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LFX
- Type
- DNA
- Length
- 8 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*CP*CP*G)-3'); DNA (5'-D(*(CBR)P*GP*GP*C)-3')
- Ligands
- 9ZQ, BA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*CP*CP*G)-3') | dna | 4 | — | — |
| C | DNA (5'-D(*(CBR)P*GP*GP*C)-3') | dna | 4 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–C · 193 Ų buried · 15 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 5LFX · Lambda-[Ru(phen)2(dppz-11,12-Me)]2+ bound to a short substituted DNA sequence · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5LFX · PDBe 5LFX
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