MolNFT v1 · #12534 · protein

Crystal structure of the GABA(A) receptor associated protein, gabarap

1KJT: “Crystal structure of the GABA(A) receptor associated protein, gabarap”. X-ray diffraction, 2 ligands (NI, NA), 1 pocket (best druggability 0.34). MolNFT v1 #12534 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1KJT
Type: protein
Length: 114 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gabarap
UniProt: P60517
Ligands: NI, NA
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gabarap	protein	114	34% helix, 21% strand	P60517

Ligands and binding sites

NI · Nickel (II) ion · metal · 2 copies · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.34	0.75	20	empty

Compared structures

1KJT · Crystal Structure of the GABA(A) Receptor Associated Protein, GABARAP · the same entry in another collection · chain A against A, TM-score 1.00
P60517 · AlphaFold monomer V2.0 prediction for gamma-aminobutyric acid receptor-associated protein… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P60517
Elsewhere: RCSB PDB 1KJT · PDBe 1KJT · UniProt P60517

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