MolNFT v1 · #125289 · protein
X-ray structure of the adduct between thaumatin and cisplatin
5L4R · Thaumatin-1: “X-ray structure of the adduct between thaumatin and cisplatin”. X-ray diffraction, 2 ligands (CPT, 73M). MolNFT v1 #125289 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L4R
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thaumatin-1
- UniProt
- P02883
- Ligands
- CPT, 73M
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thaumatin-1 | protein | 207 | 12% helix, 39% strand | P02883 |
Ligands and binding sites
- CPT · Cisplatin · ligand · 8 copies · chains A
- 73M · bis(azanyl)-chloranyl-oxidanyl-platinum · ligand · 3 copies · chains A
- TLA · L(+)-tartaric acid · additive · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 5L4R · X-ray structure of the adduct between thaumatin and cisplatin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02883
- Elsewhere: RCSB PDB 5L4R · PDBe 5L4R · UniProt P02883
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