MolNFT v1 · #125236 · protein
Crystal structure of an engineered metal-free RIDC1 variant containing five disulfide bonds.
5L31: “Crystal structure of an engineered metal-free RIDC1 variant containing five disulfide bonds.”. X-ray diffraction, 2 ligands (HEC, NA). MolNFT v1 #125236 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L31
- Type
- protein
- Length
- 419 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0ABE7
- Ligands
- HEC, NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | — | protein | 106 | — | P0ABE7 |
| C | — | protein | 101 | — | P0ABE7 |
Ligands and binding sites
- HEC · Heme C · ligand · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · 2 copies · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5L31 · Crystal structure of an engineered metal-free RIDC1 variant containing five disulfide… · the same entry in another collection · chain C against C, TM-score 1.00
- P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0ABE7
- Elsewhere: RCSB PDB 5L31 · PDBe 5L31 · UniProt P0ABE7
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