MolNFT v1 · #125097 · protein
Structure of photinus pyralis luciferase red light emitting variant
5KYT: “Structure of photinus pyralis luciferase red light emitting variant”. X-ray diffraction, 1 ligand (SLU). MolNFT v1 #125097 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KYT
- Type
- protein
- Length
- 1,075 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08659
- Ligands
- SLU
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 532 | — | P08659 |
| B | — | protein | 543 | — | P08659 |
Ligands and binding sites
- SLU · 5'-O-[N-(dehydroluciferyl)-sulfamoyl] adenosine · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KYT · Structure of Photinus pyralis Luciferase red light emitting variant · the same entry in another collection · chain A against A, TM-score 1.00
- P08659 · AlphaFold monomer V2.0 prediction for luciferin 4-monooxygenase (P08659) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08659
- Elsewhere: RCSB PDB 5KYT · PDBe 5KYT · UniProt P08659
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