MolNFT v1 · #125012 · protein
T. danielli thaumatin at 278K, data set 4
5KW7 · Thaumatin-1: “T. danielli thaumatin at 278K, data set 4”. X-ray diffraction, 1 pocket (best druggability 0.56). MolNFT v1 #125012 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KW7
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thaumatin-1
- UniProt
- P02883
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thaumatin-1 | protein | 207 | 10% helix, 40% strand | P02883 |
Ligands and binding sites
- TLA · L(+)-tartaric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.56 | 0.90 | 19 | empty |
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 5KW7 · T. danielli thaumatin at 278K, Data set 4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02883
- Elsewhere: RCSB PDB 5KW7 · PDBe 5KW7 · UniProt P02883
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.