MolNFT v1 · #125002 · protein
T. danielli thaumatin at 100K, data set 2
5KVX · Thaumatin-1: “T. danielli thaumatin at 100K, data set 2”. X-ray diffraction, 1 pocket (best druggability 0.55). MolNFT v1 #125002 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KVX
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thaumatin-1
- UniProt
- P02883
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thaumatin-1 | protein | 207 | 12% helix, 39% strand | P02883 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.55 | 0.89 | 23 | GOL |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 5KVX · T. danielli thaumatin at 100K, Data set 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02883
- Elsewhere: RCSB PDB 5KVX · PDBe 5KVX · UniProt P02883
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