MolNFT v1 · #124906 · protein + DNA
Teranry complex of human DNA polymerase IOTA(1-445) inserting dcmpnpp opposite template G in the presence of MN2+
5KT7: “Teranry complex of human DNA polymerase IOTA(1-445) inserting dcmpnpp opposite template G in the presence of…”. X-ray diffraction, 2 ligands (0KX, MN). MolNFT v1 #124906 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KT7
- Type
- protein + DNA
- Length
- 396 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UNA4
- Ligands
- 0KX, MN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | dna | 10 | — | — |
| P | — | dna | 7 | — | — |
| A | — | protein | 379 | — | Q9UNA4 |
Ligands and binding sites
- 0KX · 2'-deoxy-5'-O-[(R)-hydroxy{[(r)-hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]cytidine · ligand · chains T, P, A
- MN · Manganese (II) ion · metal · 2 copies · chains P, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KT7 · Teranry complex of human DNA polymerase iota(1-445) inserting dCMPNPP opposite template G… · the same entry in another collection · chain T against T, TM-score 1.00
- Q9UNA4 · AlphaFold monomer V2.0 prediction for DNA polymerase iota (Q9UNA4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UNA4
- Elsewhere: RCSB PDB 5KT7 · PDBe 5KT7 · UniProt Q9UNA4
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