MolNFT v1 · #124897 · protein

HMIRO1 C-domain GDP complex P41212 crystal form

5KSY · Mitochondrial rho GTPase 1: “HMIRO1 C-domain GDP complex P41212 crystal form”. X-ray diffraction, 1 ligand (GDP). MolNFT v1 #124897 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KSY
Type: protein
Length: 145 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mitochondrial rho GTPase 1
EC: 3.6.5.-
UniProt: Q8IXI2
Ligands: GDP

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mitochondrial rho GTPase 1 (EC 3.6.5.-)	protein	145	28% helix, 25% strand	Q8IXI2

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KSY · hMiro1 C-domain GDP Complex P41212 Crystal Form · the same entry in another collection · chain A against A, TM-score 1.00
Q8IXI2 · AlphaFold monomer V2.0 prediction for mitochondrial rho GTPase 1 (Q8IXI2) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8IXI2
Elsewhere: RCSB PDB 5KSY · PDBe 5KSY · UniProt Q8IXI2

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