MolNFT v1 · #124876 · protein

T15-DQ8.5-glia-GAMMA1 complex

5KSB: “T15-DQ8.5-glia-GAMMA1 complex”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #124876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KSB
Type: protein
Length: 1,623 residues
Chains: 10
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01909, O19707
Ligands: NAG

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	—	protein	181	—	P01909
B	—	protein	179	—	O19707
D	—	protein	178	—	O19707
E, G	—	protein	200	—	—
F, H	—	protein	241	—	—
I, J	—	protein	11	—	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains A, C, B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KSB · T15-DQ8.5-glia-gamma1 complex · the same entry in another collection · chain J against J, TM-score 1.00
P01909 · AlphaFold monomer V2.0 prediction for HLA class II histocompatibility antigen, dq alpha 1… · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01909
Every structure of UniProt O19707
Elsewhere: RCSB PDB 5KSB · PDBe 5KSB · UniProt P01909 · UniProt O19707

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