MolNFT v1 · #124865 · protein
1-deoxy-D-xylulose 5-phosphate reductoisomerase from vibrio vulnificus in complex arginine
5KRV: “1-deoxy-D-xylulose 5-phosphate reductoisomerase from vibrio vulnificus in complex arginine”. X-ray diffraction, 2 ligands (SRT, CL). MolNFT v1 #124865 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KRV
- Type
- protein
- Length
- 788 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8DBF5
- Ligands
- SRT, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 395 | — | Q8DBF5 |
| B | — | protein | 393 | — | Q8DBF5 |
Ligands and binding sites
- SRT · S,R meso-tartaric acid · ligand · chains B
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 11 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KRV · 1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus in complex Arginine · the same entry in another collection · chain B against B, TM-score 1.00
- Q8DBF5 · AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose 5-phosphate reductoisomerase… · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DBF5
- Elsewhere: RCSB PDB 5KRV · PDBe 5KRV · UniProt Q8DBF5
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