MolNFT v1 · #124852 · protein
Crystal structure of the er-alpha ligand-binding domain (Y537S) in complex with 16-benzylidene estrone
5KRH: “Crystal structure of the er-alpha ligand-binding domain (Y537S) in complex with 16-benzylidene estrone”. X-ray diffraction, 1 ligand (6WN). MolNFT v1 #124852 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KRH
- Type
- protein
- Length
- 488 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P03372
- Ligands
- 6WN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 231 | — | P03372 |
| B | — | protein | 237 | — | P03372 |
| C, D | — | protein | 10 | — | — |
Ligands and binding sites
- 6WN · (8~{R},9~{S},13~{S},14~{S},16~{E})-13-methyl-3-oxidanyl-16-(phenylmethylidene)-6,7,8,9,11,12,14,15-octahydrocyclopenta[a]phenanthren-17-one · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KRH · Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P03372 · AlphaFold monomer V2.0 prediction for estrogen receptor (P03372) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03372
- Elsewhere: RCSB PDB 5KRH · PDBe 5KRH · UniProt P03372
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