MolNFT v1 · #124846 · protein + DNA

Gcnf DNA binding domain - OCT4 DR0 complex

5KRB: “Gcnf DNA binding domain - OCT4 DR0 complex”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #124846 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KRB
Type: protein + DNA
Length: 188 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q64249
Ligands: ZN

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	dna	16	—	—
B	—	protein	74	—	Q64249
E	—	dna	16	—	—
G	—	protein	82	—	Q64249

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains B, G

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KRB · GCNF DNA Binding Domain - Oct4 DR0 Complex · the same entry in another collection · chain A against A, TM-score 1.00
Q64249 · AlphaFold monomer V2.0 prediction for nuclear receptor subfamily 6 group a member 1… · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q64249
Elsewhere: RCSB PDB 5KRB · PDBe 5KRB · UniProt Q64249

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