MolNFT v1 · #124751 · protein
The structure of arabidopsis thaliana FUT1 in complex with xxlg
5KOE: “The structure of arabidopsis thaliana FUT1 in complex with xxlg”. X-ray diffraction, 5 ligands (BGC, XYS, GAL). MolNFT v1 #124751 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KOE
- Type
- protein
- Length
- 1,810 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9SWH5
- Ligands
- BGC, XYS, GAL, K, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 446 | — | Q9SWH5 |
| B | — | protein | 452 | — | Q9SWH5 |
| C | — | protein | 458 | — | Q9SWH5 |
| D | — | protein | 454 | — | Q9SWH5 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 4 copies · chains A
- XYS · alpha-D-xylopyranose · sugar · 3 copies · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- K · Potassium ion · metal · 8 copies · chains A, B, C, D
- CL · Chloride ion · ion · 19 copies · chains A, B, C, D
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 5 copies · chains A, C, D
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, C, D
- GOL · Glycerol · additive · 2 copies · chains C, A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KOE · The structure of Arabidopsis thaliana FUT1 in complex with XXLG · the same entry in another collection · chain D against D, TM-score 1.00
- Q9SWH5 · AlphaFold monomer V2.0 prediction for galactoside 2-alpha-L- fucosyltransferase (Q9SWH5) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SWH5
- Elsewhere: RCSB PDB 5KOE · PDBe 5KOE · UniProt Q9SWH5
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