MolNFT v1 · #124697 · protein
The structure of type II NADH dehydrogenase from caldalkalibacillus thermarum complexed with NAD+ at 3.0 ångström resolution.
5KMR: “The structure of type II NADH dehydrogenase from caldalkalibacillus thermarum complexed with NAD+ at 3.0…”. X-ray diffraction, 2 ligands (FAD, NAD). MolNFT v1 #124697 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KMR
- Type
- protein
- Length
- 1,572 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F5L3B8
- Ligands
- FAD, NAD
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, D | — | protein | 394 | — | F5L3B8 |
| A | — | protein | 393 | — | F5L3B8 |
| C | — | protein | 391 | — | F5L3B8 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 4 copies · chains B, A, C, D
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 3 copies · chains A, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KMR · The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F5L3B8
- Elsewhere: RCSB PDB 5KMR · PDBe 5KMR · UniProt F5L3B8
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