MolNFT v1 · #124637 · protein

Structure of streptococcus pneumonia nana bound with inhibitor 9N3NEU5AC2EN

5KKY: “Structure of streptococcus pneumonia nana bound with inhibitor 9N3NEU5AC2EN”. X-ray diffraction, 2 ligands (6UD, CL). MolNFT v1 #124637 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KKY
Type: protein
Length: 941 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P62575
Ligands: 6UD, CL

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	471	—	P62575
B	—	protein	470	—	P62575

Ligands and binding sites

6UD · 5-acetamido-2,6-anhydro-3,5,9-trideoxy-9-triazan-1-yl-D-glycero-D-galacto-non-2-enonic acid · ligand · 2 copies · chains A, B
CL · Chloride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KKY · Structure of Streptococcus pneumonia NanA bound with inhibitor 9N3Neu5Ac2en · the same entry in another collection · chain A against A, TM-score 1.00
P62575 · AlphaFold monomer V2.0 prediction for sialidase a (P62575) · a predicted model of the same protein · chain B against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P62575
Elsewhere: RCSB PDB 5KKY · PDBe 5KKY · UniProt P62575

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