MolNFT v1 · #124552 · protein

Crystal structure of the class I human endoplasmic reticulum 1,2- alpha-mannosidase and MAN9GLCNAC2-pa complex

5KIJ: “Crystal structure of the class I human endoplasmic reticulum 1,2- alpha-mannosidase and MAN9GLCNAC2-pa complex”. X-ray diffraction, 6 ligands (1PS, MAN, NAG). MolNFT v1 #124552 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 5KIJ
Type: protein
Length: 452 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9UKM7
Ligands: 1PS, MAN, NAG, BMA, LA, SO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	452	—	Q9UKM7

Ligands and binding sites

1PS · 3-pyridinium-1-ylpropane-1-sulfonate · ligand · chains A
MAN · alpha-D-mannopyranose · sugar · 7 copies · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
BMA · beta-D-mannopyranose · sugar · chains A
LA · Lanthanum (III) ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
BU1 · 1,4-butanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KIJ · Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase and… · the same entry in another collection · chain A against A, TM-score 1.00
Q9UKM7 · AlphaFold monomer V2.0 prediction for endoplasmic reticulum mannosyl- oligosaccharide… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UKM7
Elsewhere: RCSB PDB 5KIJ · PDBe 5KIJ · UniProt Q9UKM7

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