MolNFT v1 · #124392 · protein

Impa metallopeptidase from pseudomonas aeruginosa

5KDW: “Impa metallopeptidase from pseudomonas aeruginosa”. X-ray diffraction, 2 ligands (ZN, PO4). MolNFT v1 #124392 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5KDW
Type: protein
Length: 1,766 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9I5W4
Ligands: ZN, PO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	883	—	Q9I5W4

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B
PO4 · Phosphate ion · ion · 7 copies · chains A, B
EDO · 1,2-ethanediol · additive · 42 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5KDW · IMPa metallopeptidase from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Q9I5W4 · AlphaFold monomer V2.0 prediction for immunomodulating metalloprotease (Q9I5W4) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I5W4
Elsewhere: RCSB PDB 5KDW · PDBe 5KDW · UniProt Q9I5W4

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