MolNFT v1 · #124378 · protein
How FAPP2 selects simple glycosphingolipids using the gltp-fold
5KDI: “How FAPP2 selects simple glycosphingolipids using the gltp-fold”. X-ray diffraction, 1 ligand (6S8). MolNFT v1 #124378 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KDI
- Type
- protein
- Length
- 422 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q96JA3
- Ligands
- 6S8
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 211 | — | Q96JA3 |
Ligands and binding sites
- 6S8 · (~{Z})-~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{S}, 5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl) oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadec-9-enamide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KDI · How FAPP2 Selects Simple Glycosphingolipids Using the GLTP-fold · the same entry in another collection · chain A against A, TM-score 1.00
- Q96JA3 · AlphaFold monomer V2.0 prediction for pleckstrin homology domain- containing family a… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96JA3
- Elsewhere: RCSB PDB 5KDI · PDBe 5KDI · UniProt Q96JA3
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