MolNFT v1 · #124369 · protein
BT_4244 metallopeptidase in complex with tn antigen.
5KD8: “BT_4244 metallopeptidase in complex with tn antigen.”. X-ray diffraction, 4 ligands (A2G, NI, NA). MolNFT v1 #124369 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KD8
- Type
- protein
- Length
- 538 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q89ZX7
- Ligands
- A2G, NI, NA, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 538 | — | Q89ZX7 |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
- NI · Nickel (II) ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KD8 · BT_4244 metallopeptidase in complex with Tn antigen. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q89ZX7
- Elsewhere: RCSB PDB 5KD8 · PDBe 5KD8 · UniProt Q89ZX7
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