MolNFT v1 · #124368 · protein
Crystal structure of murine MHC-I H-2DD in complex with murine BETA2- microglobulin and a variant of peptide (PV9) of HIV GP120 mn isolate (igpgrafyv)
5KD7: “Crystal structure of murine MHC-I H-2DD in complex with murine BETA2- microglobulin and a variant of peptide…”. X-ray diffraction. MolNFT v1 #124368 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KD7
- Type
- protein
- Length
- 1,522 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01900, P01887
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 273 | — | P01900 |
| B | — | protein | 99 | — | P01887 |
| P, E, H, K | — | protein | 9 | — | — |
| D, G, J | — | protein | 100 | — | P01887 |
| F | — | protein | 275 | — | P01900 |
| I | — | protein | 266 | — | P01900 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B, F, C, D, H, E, I, K
- GOL · Glycerol · additive · 2 copies · chains F, I, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KD7 · Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a… · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01900
- Every structure of UniProt P01887
- Elsewhere: RCSB PDB 5KD7 · PDBe 5KD7 · UniProt P01900 · UniProt P01887
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