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MolNFT v1 · #124336 · protein

Crystal structure of the amino-terminal domain (atd) of iglur delta-2 (GLUD2)

5KC8: “Crystal structure of the amino-terminal domain (atd) of iglur delta-2 (GLUD2)”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #124336 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5KC8
Type
protein
Length
398 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
O43424
Ligands
CA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein398—O43424

Ligands and binding sites

  • CA · Calcium ion · metal · 2 copies · chains A
  • EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5KC8 · Crystal structure of the amino-terminal domain (ATD) of iGluR Delta-2 (GluD2) · the same entry in another collection · chain A against A, TM-score 1.00
  • O43424 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, delta-2 (O43424) · a predicted model of the same protein · chain A against A, TM-score 0.98

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