MolNFT v1 · #124233 · protein

Papd wild-type chaperone

5K93 · Chaperone protein papd: “Papd wild-type chaperone”. X-ray diffraction, 4 pockets (best druggability 0.78). MolNFT v1 #124233 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5K93
Type: protein
Length: 420 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chaperone protein papd
UniProt: P15319
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Chaperone protein papd	protein	210	9% helix, 50% strand	P15319

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	846	0.78	0.81	63	empty
2	230	0.58	0.79	32	empty
3	148	0.46	0.77	27	empty
4	128	0.44	0.77	26	empty

Interfaces

1 interface between chains.

A–B · 1154 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

5K93 · PapD wild-type chaperone · the same entry in another collection · chain A against A, TM-score 1.00
P15319 · AlphaFold monomer V2.0 prediction for chaperone protein papd (P15319) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P15319
Elsewhere: RCSB PDB 5K93 · PDBe 5K93 · UniProt P15319

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