MolNFT v1 · #124227 · protein
Crystal structure of mouse CARM1 in complex with inhibitor U3
5K8X: “Crystal structure of mouse CARM1 in complex with inhibitor U3”. X-ray diffraction, 3 ligands (DXE, 6ZH, M2M). MolNFT v1 #124227 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K8X
- Type
- protein
- Length
- 1,370 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9WVG6
- Ligands
- DXE, 6ZH, M2M
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 343 | — | Q9WVG6 |
| B | — | protein | 343 | — | Q9WVG6 |
| C | — | protein | 342 | — | Q9WVG6 |
| D | — | protein | 342 | — | Q9WVG6 |
Ligands and binding sites
- DXE · 1,2-dimethoxyethane · ligand · 6 copies · chains B, C, D
- 6ZH · [[[(~{E})-3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]prop-2-enyl]amino]-azanyl-methylidene]azanium · ligand · 4 copies · chains A, B, C, D
- M2M · 1-methoxy-2-(2-methoxyethoxy)ethane · ligand · chains C
- EDO · 1,2-ethanediol · additive · 14 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A, C
- PG4 · Tetraethylene glycol · additive · chains A
- PE8 · 3,6,9,12,15,18,21-heptaoxatricosane-1,23-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K8X · Crystal structure of mouse CARM1 in complex with inhibitor U3 · the same entry in another collection · chain D against D, TM-score 1.00
- Q9WVG6 · AlphaFold monomer V2.0 prediction for histone-arginine methyltransferase CARM1 (Q9WVG6) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WVG6
- Elsewhere: RCSB PDB 5K8X · PDBe 5K8X · UniProt Q9WVG6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.