MolNFT v1 · #124125 · protein

Crystal structure of N-terminal amidase with gln-gly peptide

5K61 · NTA1P: “Crystal structure of N-terminal amidase with gln-gly peptide”. X-ray diffraction, 1 ligand (GLN), 3 pockets (best druggability 0.55). MolNFT v1 #124125 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5K61
Type: protein
Length: 431 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NTA1P
UniProt: N1P8Q8
Ligands: GLN
Pockets: 3 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NTA1P	protein	431	27% helix, 26% strand	N1P8Q8

Ligands and binding sites

GLN · Glutamine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.55	0.80	27	empty
2	121	0.47	0.79	18	empty
3	133	0.47	0.78	20	GLN

Compared structures

5K61 · Crystal structure of N-terminal amidase with Gln-Gly peptide · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt N1P8Q8
Elsewhere: RCSB PDB 5K61 · PDBe 5K61 · UniProt N1P8Q8

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