Research workbench
Crystal structure of N-terminal amidase with gln-gly peptide
Analyse Crystal structure of N-terminal amidase with gln-gly peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5K61
- Type
- protein
- Length
- 431 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NTA1P
- UniProt
- N1P8Q8
- Ligands
- GLN
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NTA1P | protein | 431 | 27% helix, 26% strand | N1P8Q8 |
Ligands and binding sites
- GLN · Glutamine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.55 | 0.80 | 27 | empty |
| 2 | 121 | 0.47 | 0.79 | 18 | empty |
| 3 | 133 | 0.47 | 0.78 | 20 | GLN |
Compared structures
- 5K61 · Crystal structure of N-terminal amidase with Gln-Gly peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt N1P8Q8
- Elsewhere: RCSB PDB 5K61 · PDBe 5K61 · UniProt N1P8Q8
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